Tuesday Meeting
Journal Clubs and Progress Reports
If not differently stated the Tuesday meetings are held at 9 am in the seminar room on the 2nd floor.
Schedule
| 17.12.2019 | Alexej Teamkommunumatuon / Team-building laufendes Ergebnisprotokoll |
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| 10.12.2019 | Journal Club (Alexej Knaus) Making new genetic diagnoses with old data Slides |
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| 12.11.2019 | Progress report (Oleg Borisov) | |
| 05.11.2019 | Next-generation phenotyping using computer vision algorithms in rare genomic neurodevelopmental disorders (https://www.nature.com/articles/s41436-018-0404-y) Tzung-Chien | |
| 22.10.2019 | Heritability in UK Biobank https://nealelab.github.io/UKBB_ldsc/ with LDSR (https://www.nature.com/articles/ng.3211) Carlo |
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| 08.10.2019 | Varsome - Tharindu | |
| 24.09.2019 | A survey on Deep Transfer learning https://arxiv.org/abs/1808.01974 -- Nanditha |
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| 10.9.2019 | FlowCat Progress report - Nanditha | |
| 27.8.2019 | Introduction to facial recognition ArcFace (https://arxiv.org/abs/1801.07698) |
GestaltMatch project |
| 11.6.2019 | rehearsal for ESHG | |
| 04.06.2019 |
Nanditha and Julian( https://www.nature.com/articles/nature25978 )
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| https://arxiv.org/pdf/1801.07698.pdf | ||
| https://arxiv.org/pdf/1506.00511.pdf | ||
| 07.05.2019 | Tzung Gestalt-Match project | |
| 30.04.2019 | 5 minute rounds | |
| 23.04.2019 | Steffen Künzel | |
| 26.03.2019 | Ming (Whole exome sequencing and characterization of coding variation in 49,960 individuals in the UK Biobank ->PDF) | |
| 12.03.2019 | Arezoo Bozorgmehr. Machine learning on general medicine issues | |
| 26.02.2019 | https://www.ncbi.nlm.nih.gov/pubmed/29590070 (Peter) | |
| 19.02.2019 | Tzung and Ming rehearsal for GfH | Rajarshi Biswas | |
| 12.02.2019 | Fabian and Oleg rehearsal for GfH | |
| 05.02.2019 | Besuch Julia Frank | Exome Pipeline (Alexej Knaus) |
| 29.01.2019 | our GPS with discussion (Oleg, Carlo, Ming, Julian) | |
| 22.01.2019 | hands on with AWS and Docker (Fabian Brand) | |
| 15.01.2019 | Miguel Ibrarra 1) Topological Charactersistics in regulatory models in bacteria 2) Generation of automatic pipelines for metabolomic analysis in Galaxy |
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| 11.12.2018 | Heiko Reutter and lab members | |
| 04.12.2018 | Friederike David, RNAseq pipeline | |
| 27.11.2018 | Fabian Brand (git repositories) | |
| 20.11.2018 | Martin Atta Mensah Photogrammetry on DONSON and FA patients. | |
| 13.11.2018 | Ming (master thesis: capturing epistasis using deep learning) | |
| 30.10.2018 | Carlo Maj (Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders) | Matthias Becker (Accelerating genomic data processing with Memory Driven Computing) |
| 25.09.2018 | Oleg Borisov (Investigation of genetic factors and polygenic modeling for the human muscle fibers composition) | |
| 18.09.2018 | Miguel Rodriguez de los Santos (Characterisation of Pathogenic Mutations in Genes involved in GPI Anchor Synthesis and –Maturation) | |
| 28.08.2018 | Nijmegen Sommer School WrapUp (Nanditha, Jonas, Alexej) | Ming(Deep learning on OCT scans)(Presentation) |
| 21.08.2018 | PARTEK-FLOW Help Session | |
| 14.08.2018 | Oleg Borisov (PheWAS) | Carlo Maj (PheWAS PRS) (Presentation) |
| 07.08.2018 | Thomas Welchowsky (KernDeepStackNet: An R package for fitting kernel deep stacking network) | |
| 24.07.2018 | Julian Hecker (Nonparametric Regression using Deep Neural Networks) | |
| 17.07.2018 | Tzung-Chien: DPDL ProgressReport | Nanditha: F2G & DPDL integration |
| 10.07.2018 | Alexej: Discussion on SOP of Exomes | |
| 04.07.2018 | Farhad (MS/MS proteomics) | |
| 12.06.2018 | Alexej, Carlo, Tzung-Chien: ESHG poster presentation | |
| 22.05.2018 | Ming and Oleg (ACMG/AMP Bayesian classification) | Oleg and Carlo (Polygenic risk scoring for Barrett esophagus and esophageal adenocarcinoma) |
| 15.05.2018 | Alexej Knaus (cDNMs in oocytes) | |
| 08.05.2018 | Carlo (TWAS in schizophrenia) | Fabian (Cardiovasc and DL) + PartekFlow |
| 24.04.2018 | Dejan (Deep learning on variant data) | |
| 17.04.2018 | Tzung-Chien (face-matching) | Dejan & Alexej (PIGU faces) |
| 10.04.2018 | Ming Wai Yeung (deep learning on GWAS data -> PDF) | |
| 03.04.2018 | Fabian Brand (image-based deep learning -> PDF) | Alexej Knaus (Review on DLS) |
| 26.03.2018 | Dejan Dukic (GWAS faces) | Sugi Sivalingan (NGS Pipeline) |
| 19.03.2018 | Carlo and Oleg (TWAS -> PDF) | |
| 12.03.2018 | Alexej Knaus (Clustered de novo in Oocytes) | Student presentation (Ming Wai) |
| 05.03.2018 | Tzung-Chien (DPDL for GfH) | |
| 26.02.2018 | Mohammed and Lipika (Intro) | Fabian Brand (Master Thesis) |
| 19.02.2018 | Peter Krawitz (RadarSoldiers) | Fabian Brand (DeepVariant) |
| 12.02.2018 | Dejan Dukic (Introduction) | Carlo Maj (Polygenic Risk Score -> PDF) |
| 05.02.2018 | Tzung-Chien Hsieh (DPDL) | Oleg Borisov (Biostatistics) |
| 29.01.2018 | Julian Hecker (WES) | Alexej Knaus (GPIBDs) |
| 19.02.2018 | Peter Krawitz (RadarSoldiers) | Fabian Brand (DeepVariant) |
| 12.02.2018 | Dejan Dukic (Introduction) | Carlo Maj (Polygenic Risk Score -> PDF) |
